Settings
This module implements facilities to set a Compound's folding parameters. To that end, it provides the settings macro, which allows to declaratively set any folding parameters desired.
Example usage
Here, we apply settings to a Compound, setting the temperature to 37 °C and forbidding G --- U base pairs.
let opts = settings( temperature = 37.0, # Set the temperature. noGU = 1 # Forbid G --- U base pairs. ) rnaOfInterest = compound"... the sequence ...".update(opts)
Procs
proc toParams(s: Settings): Parameters {.
raises: [], tags: [].}- Convert Settings to Parameters
proc toScaledParams(s: Settings): ScaledParameters {.
raises: [], tags: [].}- Converts Settings to ScaledParameters for partition function folding.
proc update(c: Compound; p: Parameters): Compound {.
discardable, raises: [], tags: [].}- Updates Parameters of a Compound. Returns the Compound for further processing.
proc update(c: Compound; p: ScaledParameters): Compound {.
discardable, raises: [], tags: [].}- Updates ScaledParameters of a Compound. Returns the Compound for further processing.
proc update(c: Compound; s: Settings): Compound {.
inline, discardable, raises: [], tags: [].}- Updates Parameters and ScaledParameters of a Compound from Settings. Returns the Compound for further processing.